Welcome to PepSim!

Target*

Name of target peptide (filename or peptide sequence)

User email*

Your email address will only be used to send you a link to the results

Dataset*

Upload peptide-HLA structure files in .pdb format. See Help page for more info.

Advanced options

Hamming distance*

BLOSUM62 distance*

PMBEC distance*

(optional) Weight of each sequence sub score.

Geometric distance*

Electrostatic distance*

Hydrophobicity distance*

Hydrogen bond potential distance*

(optional) Weight of each structure or biochemical sub score.

Peptide residue position weights

(optional) Weight of each amino acid position in the peptides.

Privacy policy

Data of each user are not accessible to other users, but we cannot guarantee full privacy. We assume the data submitted to PepSim is not strictly confidential.

Data retention policy

Data and results will be stored on the server only for a limited amount of time. The content of the server will be periodically deleted.